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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cucsa.337640.1 | ||||||||
| Common Name | Csa_3G819820, LOC101217721 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 220aa MW: 23925.6 Da PI: 9.3479 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.4 | 0.00049 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C++ Fs+ L H++ H
Cucsa.337640.1 46 FYCKFCSRKFSNLQALGGHQNAH 68
79*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 4.78E-6 | 43 | 73 | No hit | No description |
| PROSITE profile | PS50157 | 11.157 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 220 aa Download sequence Send to blast |
MSSSDKPINS DDEHCNQDQD SSKVPESEQQ KQPETETKTK DETRVFYCKF CSRKFSNLQA 60 LGGHQNAHKR ERDIAKREKA AAAAAAAGGR TTDAFDSIGS FYHPYYSAMA IHCLRNKSPG 120 IPIRPQSVIR KPSRSRVELG GGATAAAYGY RWWPREQYLA AAVVAQQQQI QSGGLLQGVN 180 NGFASMAMAN RNASSSSSSS QIFGADQYIV NGLDLSLKL* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HM854770 | 1e-132 | HM854770.1 Cucumis melo subsp. melo clone Cm06_A03, complete sequence. | |||
| GenBank | LN681841 | 1e-132 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
| GenBank | LN713258 | 1e-132 | LN713258.1 Cucumis melo genomic chromosome, chr_4. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004136633.1 | 1e-164 | PREDICTED: zinc finger protein 1-like | ||||
| TrEMBL | A0A0A0LBM7 | 1e-163 | A0A0A0LBM7_CUCSA; Uncharacterized protein | ||||
| STRING | XP_004136633.1 | 1e-164 | (Cucumis sativus) | ||||
| STRING | XP_004162624.1 | 1e-164 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF24750 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G01860.1 | 4e-09 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Cucsa.337640.1 |
| Entrez Gene | 101217721 |
| Publications ? help Back to Top | |||
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