PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 237aa MW: 25679.8 Da PI: 9.6897

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.337130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cucsa.337130.1 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.06	42	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.4E-26	45	100	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.87E-17	45	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-32	45	100	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKSQGA EQGASVAVLG GSTAKSPMPP GGGGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG SKDEKRSSES 120 LSGTDSSSGL QINEALRMQM EVQKRLQEQL EVQRQLQMRI EAQAKYLQKI IEEQQKLGGE 180 SKDSEVVPSA EDNKQKTCQS ESYGDVSAGP SSPRKKQRVD HGSTDDSAPS PSINLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-25	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-121	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-121	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136602.1	1e-173	PREDICTED: protein PHR1-LIKE 1 isoform X1
Swissprot	Q9SJW0	1e-70	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0A0LF93	1e-171	A0A0A0LF93_CUCSA; Uncharacterized protein
STRING	XP_004136602.1	1e-172	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-53	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.337130.1
Entrez Gene	101210085

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]