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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.336980.1 |
| Common Name | Csa_3G812740, LOC101207317 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WOX |
| Protein Properties |
Length: 252aa MW: 26793.6 Da PI: 6.149 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.336980.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 48.9 | 1.1e-15 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++
Cucsa.336980.1 22 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 82
89*****************99*************************************997 PP
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| 2 | Wus_type_Homeobox | 107.5 | 8.3e-35 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
Cucsa.336980.1 21 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 84
589***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MENHGDDPNS PNQGCERAEP VRSRWTPKPE QILILESIFN SGMVNPPKDE TVRIRKLLEK 60
FGSVGDANVF YWFQNRRSRS RRRQRQLQAA ATHQGSTGAI HYDCGNVSSG GYNGGSGGIM 120
NFAGVSSSYL GGGSSSSSSS ASGVGGDCSG GSGGSSGFSM SGHMGFSEVD QQMVVTSTPS 180
FCPSETSNLE FQSGYIIIFI NGVPTEVPKG AVDMKAMFGE ETVLVHSSGL PVLTNEFGIS 240
LHTLQHGESY FL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Hu X,Xu L
Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
Plant Physiol., 2016. 172(4): p. 2363-2373
[PMID:27784768] - Sheng L, et al.
Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
Development, 2017. 144(17): p. 3126-3133
[PMID:28743799] - Liu J, et al.
The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
Plant Cell Physiol., 2018. 59(4): p. 734-743
[PMID:29361138] - Baesso B, et al.
Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
Plant Biol (Stuttg), 2018. 20(3): p. 426-432
[PMID:29450949]
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