PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.336920.1

Common Name

Csa_3G812200, LOC101207646

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 702aa MW: 76861 Da PI: 6.4618

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.336920.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cucsa.336920.1 276 PCPDFRK-GACRRGDMCEYAHG 296 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.49E-16	6	138	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-18	12	138	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.25E-15	54	135	No hit	No description
Pfam	PF12796	1.7E-9	56	126	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.011	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	15.91	57	133	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.3E-4	92	124	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.22	92	127	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	271	297	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	276	298	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	276	298	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-5	276	296	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	304	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.071	306	330	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	31	306	329	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MNNLTVETED VFSSLLELAA NDDIDAFKRS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT 60 PLMVAATYGS TEVLKLILSL SCADVNRAVG LDRSTALHCA ASGGAGNAVD IVKRLLAAGA 120 DPNMVDENGH RPVDVIVAPL RHGELKSILT ELLKTNGFSG EGNLDVVTGG RDLHSSRPSS 180 PLNVPSSSEL VSSPTKSKLS DFPMYSASEK KEYPVDLSLP DIKNSIYSTD EFRMYSFKVR 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC 300 WLHPAQYRTR LCKDGTNCSR RVCFFAHTTD ELRPLYVSTG SAVPSPRSCT SGASAMDYTT 360 VMNLLPGSPS SVPVMSPSPF TPPMSPSANG MSHSSVPWPQ PNVPALHLPG SNIQSSRLRS 420 SLSARDMPVE DFDYLSDFDM QQQQLLNDLN CLSQPPLSSN SLNRSGRMKT MTPSNLDDLF 480 SAESSSPRYS DQSLASAVFS PTHKSAVINQ FQQQQNMLSP INTNFSPKNV DHPLLQASFG 540 VPSSGRMSPR NLEPISPVGS RLSMLAQREK QQFRSLSSRE LGSNSPSIVG SPANSWSKWG 600 PSNGRPDWAV NADEMGKLRR SSSFELGNNG EEPDLSWVQS LVKESPTEIK EKQAHPNLGV 660 DSFVSSGESS NMNSQMESVD HAALGAWLEQ MQLDHLVAQQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MNNLTVETED VFSSLLELAA NDDIDAFKRS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT  60
PLMVAATYGS TEVLKLILSL SCADVNRAVG LDRSTALHCA ASGGAGNAVD IVKRLLAAGA  120
DPNMVDENGH RPVDVIVAPL RHGELKSILT ELLKTNGFSG EGNLDVVTGG RDLHSSRPSS  180
PLNVPSSSEL VSSPTKSKLS DFPMYSASEK KEYPVDLSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTNCSR RVCFFAHTTD ELRPLYVSTG SAVPSPRSCT SGASAMDYTT  360
VMNLLPGSPS SVPVMSPSPF TPPMSPSANG MSHSSVPWPQ PNVPALHLPG SNIQSSRLRS  420
SLSARDMPVE DFDYLSDFDM QQQQLLNDLN CLSQPPLSSN SLNRSGRMKT MTPSNLDDLF  480
SAESSSPRYS DQSLASAVFS PTHKSAVINQ FQQQQNMLSP INTNFSPKNV DHPLLQASFG  540
VPSSGRMSPR NLEPISPVGS RLSMLAQREK QQFRSLSSRE LGSNSPSIVG SPANSWSKWG  600
PSNGRPDWAV NADEMGKLRR SSSFELGNNG EEPDLSWVQS LVKESPTEIK EKQAHPNLGV  660
DSFVSSGESS NMNSQMESVD HAALGAWLEQ MQLDHLVAQQ Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136593.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0A0LBZ4	0.0	A0A0A0LBZ4_CUCSA; Uncharacterized protein
STRING	XP_004136593.1	0.0	(Cucumis sativus)
STRING	XP_004165487.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Cucsa.336920.1
Entrez Gene	101207646

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]