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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.336890.1 | ||||||||
Common Name | Csa_3G812170, LOC101206353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 334aa MW: 38141.9 Da PI: 5.4277 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+ kl+g Cucsa.336890.1 37 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDQAATKLYG 86 69****999.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.21E-31 | 36 | 96 | No hit | No description |
Pfam | PF00847 | 3.2E-13 | 37 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-38 | 37 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 37 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-30 | 37 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MENGRDNKKP HTSPFHHKPW KKGPSRGKGG PQNASCEYRG VRQRTWGKWV AEIREPKKRT 60 RLWLGSFSTA EEAAMAYDQA ATKLYGPHAY LNLPHLANQN NDSSDYKSNF VKWVPSKNFI 120 SLFPHTNRAA ATVATTGSFM SLHLIHQRLQ QLKPPHPFLS SNSLTSPSKK LEDKGEKEKD 180 KDEEASVREE TTTKTTATSS GKEEEKPQID LNEFLQQLGI LKEEEEKLVI ELEEEKGNNN 240 NKDNDIDNYN DDGGCCLGSS EISNNCDYSD EVEVLSDKSF NWDSIMEIHP NIEDNHFGNF 300 QLYDHHFLNY EDELGFPNSI WDFEEDHSTR IIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 38 | 94 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652126.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A0A0LBF0 | 0.0 | A0A0A0LBF0_CUCSA; Uncharacterized protein | ||||
STRING | XP_008443124.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 2e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.336890.1 |
Entrez Gene | 101206353 |
Publications ? help Back to Top | |||
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