PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.332450.6
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 354aa    MW: 38857 Da    PI: 7.7296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.332450.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000432522901255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cucsa.332450.6 252 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 290
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-6250294No hitNo description
SuperFamilySSF474594.97E-10250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7254296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSSTITQH SSPNHTNNSS SSSNILFPHS  60
SLPFPSNCYY DAQDHHLIPE SWSQLLLGGL VGEDDQKGCM GMFQSKKLED WEEEILNSNN  120
NNTQHQQQVD VKKEHSPHAS SYVYGHGGGG SGGGGVGGGV GGDDYQLVAS KQNWSPMIQS  180
SSPQSCVTSF SSNMLDFSNN NNNNKSLADH SRPRNPPQVL DRSSECNSNV NGGAVKKARV  240
QSSSNQTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY  300
LGNTSGSTRQ HQHQQHSVRN YSLKLSLSHS DPFSILCTNL YHLFILFVSN KFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818111e-129LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132561e-129LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142511.10.0PREDICTED: transcription factor bHLH68 isoform X1
TrEMBLA0A0A0M1200.0A0A0A0M120_CUCSA; Uncharacterized protein
STRINGXP_004142511.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-36bHLH family protein