PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.332450.3

Common Name

Csa_1G697530, LOC101207910

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 380aa MW: 41179.4 Da PI: 7.1932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.332450.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	252	290	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Cucsa.332450.3 252 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 290 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.534	240	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-10	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.74E-6	250	294	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-7	254	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSSTITQH SSPNHTNNSS SSSNILFPHS 60 SLPFPSNCYY DAQDHHLIPE SWSQLLLGGL VGEDDQKGCM GMFQSKKLED WEEEILNSNN 120 NNTQHQQQVD VKKEHSPHAS SYVYGHGGGG SGGGGVGGGV GGDDYQLVAS KQNWSPMIQS 180 SSPQSCVTSF SSNMLDFSNN NNNNKSLADH SRPRNPPQVL DRSSECNSNV NGGAVKKARV 240 QSSSNQTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY 300 LGNTSGSTRQ HQHQQHSLLN ENCLKRKGVS EQEEEGKKDL RSRGLCLVPV SCTLQVGSDN 360 GADYWAPAFG GGGGGGVFR*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSSTITQH SSPNHTNNSS SSSNILFPHS  60
SLPFPSNCYY DAQDHHLIPE SWSQLLLGGL VGEDDQKGCM GMFQSKKLED WEEEILNSNN  120
NNTQHQQQVD VKKEHSPHAS SYVYGHGGGG SGGGGVGGGV GGDDYQLVAS KQNWSPMIQS  180
SSPQSCVTSF SSNMLDFSNN NNNNKSLADH SRPRNPPQVL DRSSECNSNV NGGAVKKARV  240
QSSSNQTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY  300
LGNTSGSTRQ HQHQQHSLLN ENCLKRKGVS EQEEEGKKDL RSRGLCLVPV SCTLQVGSDN  360
GADYWAPAFG GGGGGGVFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	1e-129	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	1e-129	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142511.1	0.0	PREDICTED: transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	7e-76	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0A0M120	0.0	A0A0A0M120_CUCSA; Uncharacterized protein
STRING	XP_004142511.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	8e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.332450.3
Entrez Gene	101207910

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]