PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.328060.2
Common NameCsa_6G373190, LOC101217750
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 324aa    MW: 35380.9 Da    PI: 6.1862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.328060.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-115187242
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKae 42
                    r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+
  Cucsa.328060.2 51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTAS 87
                    899*************************8....55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-114791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-134790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4524999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-95188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-95197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRTGKSNQED DEYDEDELVG KREGPSSTSN AISSIGNSKD AKNNDKANAI RSKHSVTEQR  60
RRSKINERFQ ILRDLIPHSD QKRDTASFLL EEKVQKYEGS YQNWSGEPTK LIPWRNSHWR  120
MQTFVGHQQS VKNGSASGPT YSGKFDDNNI SISPAMLASS QNPLDSHSGR DILQEADITN  180
KVPHPMSLEG NMHASIRSDT VLDHSLHIPI SDPQATECPI TNNASNQPEE MGIEGGTISV  240
SSVYSEGFMN SLAQALQSTG LDLSQASISV QIDLGKRANK GMPFGTPIFK ETGNPSSNHP  300
AMANVGDLGS GDDSEQAKKR LRT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657414.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA43e-95BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0A0KD980.0A0A0A0KD98_CUCSA; Uncharacterized protein
STRINGXP_008445413.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-90BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]