![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.323160.1 | ||||||||
Common Name | Csa_3G001720, LOC105435052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 25828.4 Da PI: 5.6991 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.7 | 2.3e-06 | 136 | 157 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k+F+++ L H+r+H Cucsa.323160.1 136 RCATCNKVFKSWKALFGHLRSH 157 6********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.642 | 135 | 157 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.4E-8 | 136 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
NTNTNANTNI NINIDAVSET SPDQRHRRER SPMAASPPPP ARIIDDINNP PTDVIEPSSS 60 IVVAAPESVT PGDVRRRQSV NAMFDVGTSS HEHVGGSSDV EAGKKRGRGD GGEQQQQVKA 120 AKKKGELTEV PKGEPRCATC NKVFKSWKAL FGHLRSHPER TYRGALPPPT AAELDIRRCQ 180 QQLASTLLTV AQQVSASRRG LDIDLNQPST ADDGDSPDNT RDAGFDLNLE PPPESDDEK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 102 | 108 | GKKRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652703.1 | 1e-176 | PREDICTED: uncharacterized protein LOC105435052 | ||||
TrEMBL | A0A0A0L0X7 | 1e-174 | A0A0A0L0X7_CUCSA; Uncharacterized protein | ||||
STRING | XP_008449156.1 | 1e-143 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35700.1 | 1e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.323160.1 |
Entrez Gene | 105435052 |
Publications ? help Back to Top | |||
---|---|---|---|
|