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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.322560.1 |
Common Name | Csa_3G002860, LOC101210622 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
bHLH |
Protein Properties |
Length: 444aa MW: 48927.7 Da PI: 8.6594 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.322560.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 43.7 | 4.8e-14 | 275 | 320 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr+++P+ K++Ka+ L A eYIk+L
Cucsa.322560.1 275 NHVEAERQRRQKLNQRFYALRSVVPNV-----SKMDKASLLADAAEYIKEL 320
799***********************6.....5****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MDEINISPSS SPNSNTTLQQ RLQFILHNRH EWWAYSIFWL ASKDINGNLV FTWGDGHLRD 60 GNGSGGGGGG CQLISFGFDD VSMDRVEGGN FVNLEWYYTG SINQTYGAVD NVVGRVFDSS 120 AYIWLTADNG LYLYDCERVK EARLRGVQTL VFVSTSVGVL ELGSSELIKQ DWSLVQYAKS 180 LFGSASSCTS STLFKQKDHH VGIGGGGMIQ PQAPSCSGFI KRETGHGGGG SSSDSLSDNS 240 DGNFMSTKIN SNVGKKRGKR SAKNNKTELS SLPVNHVEAE RQRRQKLNQR FYALRSVVPN 300 VSKMDKASLL ADAAEYIKEL KSKVQKLESK LKQSQHQTSS STISTVEQTI SSITSYTNNN 360 NNNNNVEVQL IGSEAMVRVQ CRDENYPSAR LLNVLKELGL QVHHASLSSV NEMMLQDVVV 420 RVPHAVAWRD QRTLRTAILQ RLE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_B | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_E | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_F | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_G | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_I | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_M | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
5gnj_N | 1e-24 | 273 | 337 | 6 | 70 | Transcription factor MYC2 |
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