PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.322470.1

Common Name

Csa_3G002970, LOC101210125

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 721aa MW: 79001.5 Da PI: 4.93

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.322470.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	3e-05	538	575	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R++i +++ eLre++P+ a K s + L ++++Y+ Lq Cucsa.322470.1 538 RQQIQDRIKELREIIPSgA------KCSIDSLLDRTIKYMLFLQ 575 89*************77......7777779******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.8E-15	2	87	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00248	521	575	No hit	No description
PROSITE profile	PS50888	11.426	525	574	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-5	538	583	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-6	538	581	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MLQQVHMLGE GVIGTAAFTG KHQWIFSDAS NGEWNSSMFQ DNLELQQQFS YGVKTVAVIP 60 VHPHGVIQLG STHKIWESLE ILANAKRSLC EVINGGGLTL EKTTCMASST DIAHYNDLFT 120 SIVLPANSDD WSLSAMHNNS HTDFTRKSYA SFDKQPAFDT SSYFSKSSCE NSVLTSSELL 180 PASDIREQDA QYPSYSDANV LDFCRNTVEF GNGSSTFASV SSGTGSLHMD NDQQSAQLFS 240 MNEGELTDSI NSLPDFCDKH LSEDFTMDLP DISFVDDLFQ WFDSSTENGT NGATATLSHN 300 LLHVTGVSTS SSNLVEVNKF VDDSSKVSVV SAQSLITNTS KSSEQDNTII MQNAKDKLFD 360 SLGLGTGCPV GKTWDSMITD THGSYSGGCN SMSTCTSKLA TGSTDLPRKR LFWELGIEEL 420 LDGLSNTSSA TKSSVENHHS IGSRRSKMER LSFDSNPIQL LDPCTSMNLT QPSCTVGRFP 480 CKKEAVPKSQ VSSWIDDSYS TNIGGSILEL SHKSEEPAKI CKKRAKPGES NRPRPKDRQQ 540 IQDRIKELRE IIPSGAKCSI DSLLDRTIKY MLFLQSVTKY ADKLKETNKP KLIDQRDGVA 600 VNDKCITERG SGGVTWAFKV GATPTVCPVI VEDLSSPGQM LVEMLCEERG FFLEIADMIR 660 SYGLTILKGV MEIREDKIWG QFVVEVKVNA NQSITRINVF LSLMELLQQT NIGGTEAVAN 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MLQQVHMLGE GVIGTAAFTG KHQWIFSDAS NGEWNSSMFQ DNLELQQQFS YGVKTVAVIP  60
VHPHGVIQLG STHKIWESLE ILANAKRSLC EVINGGGLTL EKTTCMASST DIAHYNDLFT  120
SIVLPANSDD WSLSAMHNNS HTDFTRKSYA SFDKQPAFDT SSYFSKSSCE NSVLTSSELL  180
PASDIREQDA QYPSYSDANV LDFCRNTVEF GNGSSTFASV SSGTGSLHMD NDQQSAQLFS  240
MNEGELTDSI NSLPDFCDKH LSEDFTMDLP DISFVDDLFQ WFDSSTENGT NGATATLSHN  300
LLHVTGVSTS SSNLVEVNKF VDDSSKVSVV SAQSLITNTS KSSEQDNTII MQNAKDKLFD  360
SLGLGTGCPV GKTWDSMITD THGSYSGGCN SMSTCTSKLA TGSTDLPRKR LFWELGIEEL  420
LDGLSNTSSA TKSSVENHHS IGSRRSKMER LSFDSNPIQL LDPCTSMNLT QPSCTVGRFP  480
CKKEAVPKSQ VSSWIDDSYS TNIGGSILEL SHKSEEPAKI CKKRAKPGES NRPRPKDRQQ  540
IQDRIKELRE IIPSGAKCSI DSLLDRTIKY MLFLQSVTKY ADKLKETNKP KLIDQRDGVA  600
VNDKCITERG SGGVTWAFKV GATPTVCPVI VEDLSSPGQM LVEMLCEERG FFLEIADMIR  660
SYGLTILKGV MEIREDKIWG QFVVEVKVNA NQSITRINVF LSLMELLQQT NIGGTEAVAN  720
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146200.1	0.0	PREDICTED: transcription factor bHLH157
TrEMBL	A0A0A0L1P1	0.0	A0A0A0L1P1_CUCSA; Uncharacterized protein
STRING	XP_004146200.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-50	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Cucsa.322470.1
Entrez Gene	101210125

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]