PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.322050.2
Common NameCsa_3G008330, LOC101204405
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 378aa    MW: 40861.8 Da    PI: 7.9404
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.322050.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32180233255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cucsa.322050.2 180 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 233
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.68E-15177233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28178233IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23180233IPR006447Myb domain, plants
PfamPF002492.5E-7181232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSS TNSKPSPNSN WRTQPISSIS PQHPLDLMFW NNNNNNKSFP  60
SHNSSSNSSN FDPSLSNSSN FLPHHFPPAV NGGGGAALFH RHLHDLHPQG LGFLRPIRGI  120
PVYQNPPSSS TSSSSSSYPI FGGSGGGGGG GGSGGSQFSY NCLRSRFLAR FPAKRSIRAP  180
RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDRA  240
AAAASSGNSD DVYDQNGSSG DTTNEDATYE NEKSSRMRLD APIGDPLTHG RFRQTVVVGE  300
DHHRSHKDLH ALWSNSSREA LFQGIPNDSS ENQPSQLDQE AKCSSHERTS DGSSLTNLSA  360
GTSPEKPNLE FTLGISI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-17181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17181235357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6820760.0LN682076.1 Cucumis melo genomic scaffold, unanchored_scaffold00308.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650330.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6166e-71KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0A0L1710.0A0A0A0L171_CUCSA; Uncharacterized protein
STRINGXP_004150668.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-60G2-like family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]