PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.321760.1
Common NameCsa_3G011750, PALM1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 195aa    MW: 21695.8 Da    PI: 6.2206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.321760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-053860123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ Cg+ F++   L  H+++H
  Cucsa.321760.1 38 YNCTFCGREFRSAQALGGHMNVH 60
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-63565No hitNo description
Gene3DG3DSA:3.30.160.603.0E-43763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.8E-73861IPR007087Zinc finger, C2H2
SMARTSM003550.00363860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7593865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MWNPNQAHQD EDDDSWEIRA FAEDTGNIMG TTWPPRFYNC TFCGREFRSA QALGGHMNVH  60
RRDRVRFHHQ IQPNSIQPIS PSFTIPTPKL IYNEIDEVCF LYQLPNDNIN FLNSITSSDS  120
CLQSSFTAQH PSSTRTASSL QSLKSPGELR GGTSSSSSHC SHISSKGDDS LISINDGNEK  180
VDLELRLGHR ASPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-113360229superman protein
2l1o_A3e-113360229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533350.0HM453335.1 Cucumis sativus palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148758.11e-144PREDICTED: transcriptional regulator SUPERMAN
TrEMBLE2IBP91e-142E2IBP9_CUCSA; Palmate-like pentafoliata 1 transcription factor (Fragment)
STRINGXP_004164417.11e-143(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-34C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]