PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.321150.1
Common NameCsa_3G018320, LOC101203172
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 345aa    MW: 38947.8 Da    PI: 5.2326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.321150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19193243255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f ta eAa+a+++a+ kl+g
  Cucsa.321150.1 193 HYRGVRQRP-WGKFAAEIRDPTRRG--SRVWLGTFETAIEAARAYDRAAFKLRG 243
                     6********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-31193251No hitNo description
PROSITE profilePS5103224.395193251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32193252IPR001471AP2/ERF domain
PfamPF008471.0E-13193243IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22193252IPR016177DNA-binding domain
SMARTSM003804.5E-39193257IPR001471AP2/ERF domain
PRINTSPR003671.6E-13194205IPR001471AP2/ERF domain
PRINTSPR003671.6E-13233253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEFVDLEEAV ALENIKLHLL GELSPFPRIL PSNDDNLCVS SSDRSVSSGS SSTSNCVLNI  60
SDFFNSDEIF QFSPDLMPTQ SSSVSSNDDF FGFEMKPNVI DLTTPKSTEL VEFEMKPRVF  120
EDFNSRTRYS NSSIEVESKI SQVTNSNRKR ANLKISLPNK TTQWINFDSA VEKKNRVVVE  180
QRSRDVEAER KVHYRGVRQR PWGKFAAEIR DPTRRGSRVW LGTFETAIEA ARAYDRAAFK  240
LRGSKAILNF PLEASNSYSE AVVVGKRRRE EEEEVEAVVV KKEKREEEEV KQVGADVSYL  300
KDMPLTPSSW SMVWDGETKG VFNIPPLSPL SPHPAFGFPQ LMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-30193252261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147224.10.0PREDICTED: ethylene-responsive transcription factor 6
TrEMBLA0A0A0L4650.0A0A0A0L465_CUCSA; Uncharacterized protein
STRINGXP_004164448.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-44ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]