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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.320850.1 | ||||||||
Common Name | Csa_3G020600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRAS | ||||||||
Protein Properties | Length: 775aa MW: 85071.1 Da PI: 5.5024 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.3 | 5.6e-103 | 412 | 773 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ ++ ++ pp+ ++ +++ ++ a+k+fse+sP+++f ++ Cucsa.320850.1 412 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNF 504 679*************************************************98..6667788888888999*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+lea++ +r+Hi+Dfdi+ G+QW++++q+L+ R++g+psl+iT+++sp++++ el ++e+L++fA+ +g++fef+v+ ++++l+ Cucsa.320850.1 505 TCNQALLEALDDIDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVV---NFDSLNQ 596 ************************************************************************************8...6666665 PP GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++ r +++Ea+aVn+ l + ++++ l+s +L+++k+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ Cucsa.320850.1 597 NSFslpfpRSSENEAVAVNFPLWCSS--NQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 684 555223445555********995544..45777777....*********************************************887.7899** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+Er+ll+++i++ v + ++ e++ W+ + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr Cucsa.320850.1 685 VNKIERFLLQPRIESTVLGRLRA----PERMPPWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 773 ******************99998....999**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.46 | 385 | 753 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-100 | 412 | 773 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence Send to blast |
MRGISFHFQG KGELEFSAAF SSSSPICSGF AEKWVKKGEE QQEQELDEEQ EGFSYFALPN 60 NEPTSVLHMR SPSPPTSAST LSSSFGGGGG GGCVPSLPPE TPAVEPVAGA GVGNVIFPGG 120 LERCGVGLED LESMWSETAG PEPSFLRWFA GDVEDPSLGS KSVLANGNIP FDLDGNAGIG 180 IVDQGSEFDT GSGNVLANIN PNLSFPLAAC AGFSDVNGNN KSFNRTTCGG VVNYKSSSLG 240 SNNRHGNFNV QNPIFTGSLE NLVVPVSGMI YPQQLQPFES PDEKPQNLNT QVLLNQHQQP 300 QNPSFFVPLT FGQQEQQLQP QLKRRNSSGG LDPNPNGQIL KVPFMDPGNE IFLRNHQLQV 360 LQQQQQQQLG YPPGLQFLPQ QKAMSPKPKV VGLGDEMSYH NPPQQQHQHA LLDQLYKAAE 420 LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ LLLLMNNPVN PPPPRCPTPF 480 DVIFKMGAYK VFSEISPLIQ FVNFTCNQAL LEALDDIDRI HIVDFDIGFG AQWASFMQEL 540 SLRNRGAPSL KITAFASPST HHPIELGLMR ENLTQFANDI GISFEFEVVN FDSLNQNSFS 600 LPFPRSSENE AVAVNFPLWC SSNQPAMLPS LLRFIKQLSP KIVVSLDRGC DRSDLPFPQH 660 MLQALQSYIN LLESLDAINM NSDAVNKIER FLLQPRIEST VLGRLRAPER MPPWKTLFAS 720 AGFTPVTFSN FTETQAECVA KRTSVRGFHV EKRQASLVLC WQRRELISAS AWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-34 | 430 | 773 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147202.1 | 0.0 | PREDICTED: scarecrow-like protein 22 | ||||
Swissprot | O81316 | 1e-128 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A0A0L5J3 | 0.0 | A0A0A0L5J3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147202.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13269 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-126 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.320850.1 |
Publications ? help Back to Top | |||
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