PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.320600.2

Common Name

Csa_3G033810, LOC101219601

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 126aa MW: 14124.9 Da PI: 10.0276

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.320600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	133.6	2.4e-41	51	122	99	169
YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ + ++vpr+pp ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fg Cucsa.320600.2 51 LTMATRVPNDVPRQPPtINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFG 122 345777788999999989****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-39	51	122	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-9	61	116	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.0E-5	71	117	IPR009071	High mobility group box domain
CDD	cd01390	3.86E-6	77	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MCGGMLLPSP SQFHGFTHST TFLSPNTHNF LEEISNPNPN FLMNQTEGID LTMATRVPND 60 VPRQPPTINR PPEKRQRVPS AYNRFIKDEI QRIKAANPDI SHREAFSAAA KNWAHFPHIR 120 FGSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	8e-57	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	8e-57	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150647.1	6e-89	PREDICTED: protein YABBY 4 isoform X2
Swissprot	A2X7Q3	1e-34	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-34	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A0A0L1N8	1e-87	A0A0A0L1N8_CUCSA; Uncharacterized protein
STRING	XP_004150647.1	2e-88	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-35	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.320600.2
Entrez Gene	101219601

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]