PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 323aa    MW: 38142.5 Da    PI: 6.7205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-5571381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yL+kk+++k+++l +vik+vd+yk+ePwdL++  ++ + ++++wyfFs++dkky+t++r+nratk+g+Wkatg+dk++
  Cucsa.320590.1   7 VPPGFRFHPTDEELIDYYLRKKISSKRIDL-DVIKDVDLYKIEPWDLQElcRMGNeDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAI 100
                     69****************************.9***************9545554425559*********************************** PP

             NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s+ ++ l+g++ktLvfy+grap+g+k+dW+mheyrle
  Cucsa.320590.1 101 YSRhGHGLIGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 138
                     **966678****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-585147IPR003441NAC domain
PROSITE profilePS5100557.4427189IPR003441NAC domain
PfamPF023659.9E-298137IPR003441NAC domain
SuperFamilySSF1019416.8E-58177189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNTIPHVPPG FRFHPTDEEL IDYYLRKKIS SKRIDLDVIK DVDLYKIEPW DLQELCRMGN  60
EDQEDWYFFS HKDKKYPTST RTNRATKEGF WKATGRDKAI YSRHGHGLIG MRKTLVFYRG  120
RAPNGQKSDW IMHEYRLETT ENGPSQATCR QTQLYQCHFF IQLKQKLSFT SIIGLIIEEG  180
WVVCRVFKKK MTTIQKMGDY ESPYWQDHDQ ISFMPDIDSP NQISHLCKHE VDDHHHLHFA  240
MFDNASPQLP RRPELISDVS SSSYDLRANA PSSSQTFFHA FDSQSMDWRA MDRFVASQLS  300
ADRDDDHRRE EEAIYSEDTK YTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-45619014169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147975.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotF4HYV51e-102NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A0A0L6Z70.0A0A0A0L6Z7_CUCSA; Uncharacterized protein
STRINGXP_004159532.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2452433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.11e-104Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]