PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320500.1
Common NameCsa_3G035880
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 285aa    MW: 32548.4 Da    PI: 10.274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F +++ L++H +  H
  Cucsa.320500.1 119 YLCRVCGRNFYTNEKLVNHFKQiH 142
                     56*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.5E-1137122IPR029060PIN domain-like
SuperFamilySSF576673.84E-5118144No hitNo description
PROSITE profilePS5015712.071119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4123143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061677.38E-13125272No hitNo description
PfamPF019362.0E-10181271IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.5E-11204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLSFIRFRNL SYKFRNETVL IRCFHSGTNP KSNSPDSSSS TVAIFWDLDN KPPKSLPPYQ  60
AAVKLRTAAA SFGAVRYMVA YANRHAFSYV PQVVRERKRE RKMLNQLERK GVIKSIEPYL  120
CRVCGRNFYT NEKLVNHFKQ IHESEHKKRL NQIESAKGSR RVKLVAKYSM KIQKYKNAAR  180
DVLTPEVGYG LADELKRAGF FVKTVSDKPE AADVELRNDM VEIMDRRKAE CLVLVSDDSD  240
FVNVLKEAKL RCLRTVVVGD LNDGPLKRNA DTGFSWQEIF NGEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448905.10.0PREDICTED: uncharacterized protein LOC103490929
TrEMBLA0A1S3BKT20.0A0A1S3BKT2_CUCME; uncharacterized protein LOC103490929
STRINGXP_004159528.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-128C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]