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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.309430.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 220aa MW: 24723.8 Da PI: 8.5637 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.309430.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 109.8 | 2.1e-34 | 14 | 102 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
aCaaCk++r+kC + C+lapyfpae++++f++vhk+FG+snv+k++k+++ee++++a++sl++eA +r++dPv G +g ++++ ++++
Cucsa.309430.1 14 ACAACKHQRKKCHETCPLAPYFPAERNREFQAVHKVFGVSNVTKMVKNVREEDKRKAVDSLIWEAVCRQNDPVLGPYGEYKRVLEEVKV 102
7*****************************************************************************99998887765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MQKHNNGVLQ GTPACAACKH QRKKCHETCP LAPYFPAERN REFQAVHKVF GVSNVTKMVK 60 NVREEDKRKA VDSLIWEAVC RQNDPVLGPY GEYKRVLEEV KVCKLLTQNQ SIMNGGQVGL 120 GYKPIIPCLG AWNNNNNNNS NDNNNNNGNG NGVNSSHLLN YFHDNYVSAI VDSSPYSNSS 180 AYNLQSHEKL MRLQQDKEIS SNMVVPLQQQ QHPTFHHCF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5ly0_A | 3e-18 | 11 | 91 | 9 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-18 | 11 | 91 | 9 | 88 | LOB family transfactor Ramosa2.1 |