PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 405aa MW: 46299.5 Da PI: 7.1533

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.308970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.8	3e-28	125	210	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW++vs+ m +e g++rs k+Ckek++nl k+ykk+keg+ +r+ + +++++f+qlea Cucsa.308970.1 125 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDQVSRLMaEEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 210 8***********************************7788************************985..5557*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.82E-21	124	190	No hit	No description
Pfam	PF13837	2.5E-20	124	211	No hit	No description
PROSITE profile	PS50090	6.655	124	183	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MSDKFTHPDL RHLMADDKPN FPATPQTLDS FFLHHSHLTR GFSPVPPPPK FQPLQLVLTE 60 PTGLLHFGCS DNSTATGGGG GSSTAANATV SSAPFLRRNK LVIDNEWCSP YGNDVVGGSN 120 GFNSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR LMAEEYGYKR SGKKCKEKFD 180 NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGQSNDQIS SPIIESNFYR NSIARSETPP 240 PEKYPSGGEN HQEAGGGMSL SFTISSDFET SSSGNYHDDD LSAIAFMMNQ KKVEKSGETN 300 VSKRDQGGVS NNNNNKGESW REEIEKMVDM KMSRLMEVQE NWMEKIMSSV EDGEKERIMK 360 EEEWRKQEMA RFDHEMSEFC ARERAWLHAR ELAFMEIVKR FADKX

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MSDKFTHPDL RHLMADDKPN FPATPQTLDS FFLHHSHLTR GFSPVPPPPK FQPLQLVLTE  60
PTGLLHFGCS DNSTATGGGG GSSTAANATV SSAPFLRRNK LVIDNEWCSP YGNDVVGGSN  120
GFNSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR LMAEEYGYKR SGKKCKEKFD  180
NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGQSNDQIS SPIIESNFYR NSIARSETPP  240
PEKYPSGGEN HQEAGGGMSL SFTISSDFET SSSGNYHDDD LSAIAFMMNQ KKVEKSGETN  300
VSKRDQGGVS NNNNNKGESW REEIEKMVDM KMSRLMEVQE NWMEKIMSSV EDGEKERIMK  360
EEEWRKQEMA RFDHEMSEFC ARERAWLHAR ELAFMEIVKR FADKX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	176	KRSGKKCKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150493.1	0.0	PREDICTED: trihelix transcription factor PTL-like
TrEMBL	A0A0A0KUT9	0.0	A0A0A0KUT9_CUCSA; Uncharacterized protein
STRING	XP_004167426.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	6e-65	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.308970.1
Entrez Gene	101219202

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]