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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.308180.1 |
| Common Name | Csa_5G623560, LOC101203396 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 470aa MW: 52677.5 Da PI: 5.2575 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.308180.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 449.8 | 1.8e-137 | 48 | 462 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l++lLl cA+ v+ g+ e+a+ L+++s+laspdgd+mqR+aayfteALa r+++s+++l +al++++ ++ ee+ a++lf+e++P+lk+++
Cucsa.308180.1 48 LIHLLLGCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHRALNSTKIL--SVPEEILAQRLFFELCPFLKLAY 140
689*************************************************************988887..59********************* PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
+++NqaI ea+ege+++HiiDf +++QW++Llq+L +Rp+gpp+lRiTg+++ +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+
Cucsa.308180.1 141 VMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHE----QKEVLEQMALRLTEEAEKWDIPFQFTP-VVSKLENLD 230
******************************************************....9**************************.799****** PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrll.....................................................desvsleserdevLklvk 232
le+Lrvk+gEalaV++vl+lh++l + s+ + +++L +++
Cucsa.308180.1 231 LESLRVKTGEALAVSSVLELHSVLatdddkktsppasknlqkllrmkqrtlgewletdslqvfsspdsasvsspsglNPSQ----KMNSFLTALW 321
*******************************************************************99998644433333....5667****** PP
GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
+lsPkv+v++eqe+++n++ F+er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++acegaer+erhe+lekW rle++GF++v
Cucsa.308180.1 322 GLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWMLRLESVGFGKV 416
*********************************************************************************************** PP
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
pls++ + ++ll+ ++ dgy+++ee+g l+++W+drpL+svSaW
Cucsa.308180.1 417 PLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAW 462
********************************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MAGMFNGEGS SSVTSSPLQF FPWSLSPGIG SPYPFLRELK SEERGLCLIH LLLGCANQVA 60
IGNIENANVG LEQISHLASP DGDTMQRIAA YFTEALADRI LKSWPGLHRA LNSTKILSVP 120
EEILAQRLFF ELCPFLKLAY VMTNQAIIEA MEGERMIHII DFKSCEPAQW INLLQTLKDR 180
PDGPPHLRIT GIHEQKEVLE QMALRLTEEA EKWDIPFQFT PVVSKLENLD LESLRVKTGE 240
ALAVSSVLEL HSVLATDDDK KTSPPASKNL QKLLRMKQRT LGEWLETDSL QVFSSPDSAS 300
VSSPSGLNPS QKMNSFLTAL WGLSPKVMVI TEQESNLNGS AFMERVLEAL NFYAALFDCL 360
ESTVSRSSIE RQRVEKMLLG EEIKNIIACE GAERTERHEK LEKWMLRLES VGFGKVPLSY 420
HSMLLGSRLL QSYGYDGYKI KEENGFLFIC WQDRPLFSVS AWGFQRQSS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Gong X, et al.
SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
Plant Physiol., 2016. 170(3): p. 1675-83
[PMID:26818732] - Lee SA, et al.
Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
Mol Plant, 2016. 9(6): p. 870-84
[PMID:26970019] - Choi JW,Lim J
Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
Mol. Cells, 2016. 39(7): p. 524-9
[PMID:27306644]
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