PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.307880.1

Common Name

Csa_5G623880, LOC101220512

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 346aa MW: 38564.7 Da PI: 10.6577

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.307880.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.2	3.3e-11	61	128	1	64
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykki 64 +W++ v Li+a++++++ +r+klk+++We+v++++ ++ +++ +qCk+k+e+++k+ +++ Cucsa.307880.1 61 EWSEGAVSILIDAYESKWKLRNRAKLKGHDWEDVARHVssrsNLTKSSKTHTQCKNKIESMKKKCRQE 128 5***********************************75444445577788*******9865543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-15	59	139	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MEIKPTPSSP PTITSLTQTQ IQTSPSLLFN HHHQLPDDNP SPKTNPVSNG GGRGRRLKRD 60 EWSEGAVSIL IDAYESKWKL RNRAKLKGHD WEDVARHVSS RSNLTKSSKT HTQCKNKIES 120 MKKKCRQEPA DSSWPLYHRI LPLVGGNTNL TPSPPPSLPP QNSHGSNGVD NINPSPKEDG 180 VDNGRGVDEV LSEKNENNNN SKKKKKKKKM VREKSTDSSS STPAAIIYSS SDEKEKGVAA 240 MRPKLQQSKM KKKKRRRSGE VDSLEQIAGS IRWLAEVVVR SEQARMEMIK DIEKMRAEAE 300 AKRGELDLKR TQIIANTQLE IAKLFASPTN KPLVDHSSPL RIART*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MEIKPTPSSP PTITSLTQTQ IQTSPSLLFN HHHQLPDDNP SPKTNPVSNG GGRGRRLKRD  60
EWSEGAVSIL IDAYESKWKL RNRAKLKGHD WEDVARHVSS RSNLTKSSKT HTQCKNKIES  120
MKKKCRQEPA DSSWPLYHRI LPLVGGNTNL TPSPPPSLPP QNSHGSNGVD NINPSPKEDG  180
VDNGRGVDEV LSEKNENNNN SKKKKKKKKM VREKSTDSSS STPAAIIYSS SDEKEKGVAA  240
MRPKLQQSKM KKKKRRRSGE VDSLEQIAGS IRWLAEVVVR SEQARMEMIK DIEKMRAEAE  300
AKRGELDLKR TQIIANTQLE IAKLFASPTN KPLVDHSSPL RIART*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	KKKKRR
2	250	256	KKKKRRR
3	251	256	KKKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142481.2	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0A0KRQ8	0.0	A0A0A0KRQ8_CUCSA; Uncharacterized protein
STRING	XP_004170757.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-73	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.307880.1
Entrez Gene	101220512

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]