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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.307870.1 |
Common Name | Csa_5G623900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C2H2 |
Protein Properties |
Length: 326aa MW: 37364.6 Da PI: 7.9267 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.307870.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.1 | 7.5e-06 | 22 | 42 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cg F+ + +Lk+H+++H
Cucsa.307870.1 22 CQQCGAAFRKPAYLKQHMQSH 42
*******************99 PP
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2 | zf-C2H2 | 16 | 3.5e-05 | 48 | 72 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y C+ C+ s++rk++L+rH+ H
Cucsa.307870.1 48 YICSvdGCNASYRRKDHLTRHLLHH 72
899999***************9987 PP
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3 | zf-C2H2 | 18.2 | 6.9e-06 | 125 | 149 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++Cp Cgk+F+ s L++H +H
Cucsa.307870.1 125 FVCPedGCGKVFRYASRLQKHEGSH 149
89*******************8666 PP
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4 | zf-C2H2 | 23.8 | 1.1e-07 | 218 | 241 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23
C+ C+k+Fs+ snL++H+++ H
Cucsa.307870.1 218 CTyeGCSKVFSTASNLQQHMKVvH 241
88889****************988 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00355 | 0.017 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.048 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-9 | 22 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.22E-11 | 34 | 74 | No hit | No description |
SMART | SM00355 | 0.0041 | 48 | 72 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-10 | 48 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.494 | 48 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 77 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.759 | 77 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-8 | 119 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.32E-5 | 122 | 150 | No hit | No description |
PROSITE profile | PS50157 | 10.762 | 125 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.8E-4 | 125 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 127 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.55 | 157 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-4 | 159 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6 | 185 | 207 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.7E-8 | 197 | 253 | No hit | No description |
SMART | SM00355 | 7.6E-5 | 216 | 241 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.006 | 216 | 246 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.4E-5 | 217 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-8 | 218 | 241 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 218 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 242 | 269 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.8 | 247 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 249 | 273 | IPR007087 | Zinc finger, C2H2 |
Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MEIGKHNDDG DDKTKSGKFN ICQQCGAAFR KPAYLKQHMQ SHSLERPYIC SVDGCNASYR 60 RKDHLTRHLL HHQGTMFKCP IESCCREFAY ASCVSRHLKE CHEGEVPPEE CHEGEAPPEE 120 CKKQFVCPED GCGKVFRYAS RLQKHEGSHV KLDSIEACCT EPGCLKTFTN KQCLRAHMQT 180 CHQYVKCEIC GEKKLRKNLK QHLRQKHESE GPLEAIPCTY EGCSKVFSTA SNLQQHMKVV 240 HLEQKPFVCC FPGCGMRFGY KHVRDNHEKS GQHVYTNGDF EAADEQFRSK PRGGRKRICP 300 TVEMLIRKRV TPPSELDFMM EEEDY*
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Functional Description ? help
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Source |
Description |
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU284120 | 0.0 | EU284120.1 Cucumis sativus C2H2 zinc finger protein 1 mRNA, complete cds. |