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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.307270.2 | ||||||||
Common Name | WRKY24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 342aa MW: 38112.7 Da PI: 9.0551 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104 | 8.2e-33 | 76 | 132 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+kv ei+Y+geHnh+k Cucsa.307270.2 76 DGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSL-DGKVAEIVYKGEHNHPK 132 9***************************************.***************85 PP | |||||||
2 | WRKY | 79.4 | 3.9e-25 | 273 | 326 | 4 | 58 |
SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 g +WrKYGqK+vkg+ +pr YYrCt +C+++k ver++edp+ +++tYeg+Hnh Cucsa.307270.2 273 GVRWRKYGQKVVKGNLYPR-YYRCTGLKCKARKYVERASEDPDSFITTYEGKHNH 326 679***************9.*********************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-30 | 68 | 133 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.57 | 69 | 133 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 71 | 133 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 74 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 76 | 131 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-25 | 258 | 327 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.993 | 265 | 329 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-21 | 268 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-25 | 270 | 328 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-19 | 273 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDNKATERVV IARPVASRPT CSSFKSFSDI LTCAFDTSPP NMSSETRVAA IRPKTVSKKD 60 PTLLRPQISG AQPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPSCPVKKK VERSLDGKVA 120 EIVYKGEHNH PKPQPLKQNS SGTQREGSIS NGTTQDTNPE LWFNYLNGRI EGCESRIENH 180 IEKTCQDRVT IPFDPFSNQE VNARCGISDN NSCGLSVECE EGSKGLQSMD DKLRSKRRGG 240 KNPTNEGETL IEGVNEHHAM AQDSTGIEIS GKGVRWRKYG QKVVKGNLYP RYYRCTGLKC 300 KARKYVERAS EDPDSFITTY EGKHNHGISL GTSISVAPEM E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 76 | 328 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 76 | 328 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984023 | 0.0 | GU984023.1 Cucumis sativus WRKY protein (WRKY24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267637.1 | 0.0 | WRKY transcription factor 44-like | ||||
Refseq | XP_011650226.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like isoform X1 | ||||
Swissprot | Q9ZUU0 | 9e-69 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | E7CEX2 | 0.0 | E7CEX2_CUCSA; WRKY protein | ||||
STRING | XP_004137798.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004166604.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 1e-71 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.307270.2 |
Entrez Gene | 101211736 |