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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.306790.1 | ||||||||
Common Name | Csa_3G740150, LOC101214866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 772aa MW: 85827.4 Da PI: 6.6258 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.1e-08 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + Cucsa.306790.1 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 44 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 47 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.623 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-5 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-5 | 52 | 95 | No hit | No description |
Pfam | PF00249 | 9.4E-6 | 52 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MQTDLIVSSN SETHLQSETI IAHVGDQGIA ASTPDHVIEP LPAKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA 180 VSNQSRALGH DGRAVKLVLV DTQNIPKLGP RKTASRRNVN VGINRGNNGG YPTVLKPSRQ 240 RRKSEGGVSS AAYKKWEKAA IAGVSLVADA AEHLERTITN RDVLRDQNTL GKKSTDPAGS 300 PLLLLPPLQP NSLIDVASIK LKLQLFPVDD GTRRALESDK HNPYLELTLS TRKKISSVLE 360 HLSRKWGNSS AAHGELMLFP YSIQRKSLAD CQRWTQDSFE SAGDVYATIG RPQVFRLRYG 420 WCSNAEHESV ELQTSVPAYC IQDDHIMDAR DIEGRIVHAA SIDAQPVDFN KDEVGTLTKN 480 TSTPTAPCES ERCISARPND LLKSSDPVLN MSWDKKNAAD RTIIQRSDDV DDLKLSNGTS 540 LSAGEWADSL TNISIGDLLS GVSQDVDANC VDTPLAEGTQ CLQQIPFSCD SFDAAIAAHI 600 SRQQDKTVPQ PTLASHASSI WDAEETCDAF SFQKNPVTLQ EVPSSFTFSS LRGCKHVART 660 NSMGFSHMTE DFPRSESPIE DHIQEDLMDE CQSDPQITET KDIDELADIY WPDSLGPLDL 720 DLPSTNKYHN EELILGDSLS SLNRLIASSL DAFQNCSFFG LDKKESSAFN S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651958.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_011651959.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A0A0LE12 | 0.0 | A0A0A0LE12_CUCSA; Uncharacterized protein | ||||
STRING | XP_008442695.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.306790.1 |
Entrez Gene | 101214866 |
Publications ? help Back to Top | |||
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