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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.306690.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
MYB |
Protein Properties |
Length: 313aa MW: 34706.6 Da PI: 7.431 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.306690.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
Cucsa.306690.1 14 KGPWSPEEDAKLKDYIQKHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd ++ ++ + G++ W+ Ia+ ++ gRt++++k++w++
Cucsa.306690.1 69 GDFSEEEDTIICNLYTTIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MGRTPCCDKA NVKKGPWSPE EDAKLKDYIQ KHGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGD FSEEEDTIIC NLYTTIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLTSP 120 HGMLPQFIQP SSTNSSSSSS SPSSYSNNGP LISTLLEPIS FSSNLLLNPT TTTTNNNATP 180 LFNHQAVSQD HQSFMMSTMV GGENNYHVKL GDQRSLLVFG GDQGSCSSSD AEYGGGIGVE 240 EKRRSLSSSN MSFVEWSRVV NGWNNNEKQL EDQGMWNNNS NMENNYSPFM DYGLEEIKQL 300 ISSSNCTTNV LF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |