![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.306530.1 | ||||||||
Common Name | Csa_3G743410, LOC101217263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28536.8 Da PI: 7.8035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cucsa.306530.1 89 YQCKTCDRCFPSFQALGGHRASH 111 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Cucsa.306530.1 179 HECSICGAEFSSGQALGGHMRRH 201 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.22E-5 | 88 | 117 | No hit | No description |
Pfam | PF13912 | 3.3E-10 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.847 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.077 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.83E-6 | 175 | 202 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 177 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.2E-13 | 178 | 203 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 179 | 201 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 179 | 206 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA 60 QGRSRITEGC SSVFVQQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNI 120 TANSVEQQHQ QQQQQHHHHH HQDNNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE 180 CSICGAEFSS GQALGGHMRR HRALTATTTR PITTTPQFIK KERNMLELDL NLPAPEDDRH 240 RPPVAVFSTA SPLVDCHY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652845.1 | 1e-154 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0A0LDR8 | 1e-152 | A0A0A0LDR8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161279.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.306530.1 |
Entrez Gene | 101217263 |
Publications ? help Back to Top | |||
---|---|---|---|
|