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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.304130.1 | ||||||||
Common Name | Csa_5G148660, LOC101204617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 34258 Da PI: 8.2727 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 39 | 99 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s Cucsa.304130.1 39 KEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPS 99 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 24 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-33 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVT NTCPKPSVSI LERKIRPQKE QALNCPRCNS SNTKFCYYNN 60 YSLTQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRPSS NSSSSTSPTP PNSSSQSQPN 120 FPKKILDHQL PQNPKITPSQ DLNLFFPPSN NQDHHRFTTT NNNLSEMILV GSNPSINNAT 180 SSSASATTTM SSPPPSQPSV MELLTGMANN NNNNSSRGLN CFVPMSSVVV PDPSSVYTGG 240 FPDLHDQFKP SLGFSLDGYG VVSTEAGNGA GRLMQLPFED LKQVSNGVEQ GKDQQGDDHN 300 SNGYWSGMLG GGSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143850.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 2e-62 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A0A0KK04 | 0.0 | A0A0A0KK04_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143850.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-49 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.304130.1 |
Entrez Gene | 101204617 |
Publications ? help Back to Top | |||
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