PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.302660.1 | ||||||||
Common Name | Csa_5G156150, LOC101206054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 302aa MW: 33841.1 Da PI: 6.6306 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.9e-08 | 250 | 283 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Cucsa.302660.1 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283 469*****************************87 PP | |||||||
2 | ELK | 25.5 | 3.2e-09 | 204 | 225 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Cucsa.302660.1 204 ELKIELKQGFKSRIEDVREEIL 225 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.5E-19 | 33 | 77 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.5E-18 | 35 | 76 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.9E-24 | 93 | 148 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-17 | 97 | 147 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 204 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 224 | 287 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-16 | 226 | 291 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 226 | 291 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.18E-11 | 227 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 231 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 244 | 283 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MQEPGLGMMT AAGGSSGGLS GDVSVSGEGV HNSQLKAEIA THPLYEQLLS AHVACLRVAT 60 PIDQLPMIDA QLSQSHHILR SYASSQQHHQ NAHSLTPHER QELDNFLAQY MIVLCSFKEQ 120 LQQHVRVHAV EAVMACREIE NTLQALTGVS LGEGTGATMS DDEDDIPMDF SLDQSGADAH 180 DMMGFGPLLP TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV 240 LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK 300 R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 227 | 283 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 300 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 1e-164 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 1e-164 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143939.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 7 | ||||
Swissprot | Q9FPQ8 | 1e-175 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0A0KKD3 | 0.0 | A0A0A0KKD3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143939.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004159970.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-172 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.302660.1 |
Entrez Gene | 101206054 |