PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.302580.1 | ||||||||
Common Name | Csa_5G157220, LOC101216674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29813.7 Da PI: 5.681 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 81 | 133 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ s +++Lr+llP ++K s + ++v+YI+++q Cucsa.302580.1 81 KKIMHRDVERQRRQEMSSLYSTLRSLLPIeY---LKGKRSICDHMHETVKYIRYMQ 133 5789*************************77...9*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-13 | 79 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.32E-10 | 79 | 137 | No hit | No description |
PROSITE profile | PS50888 | 13.141 | 80 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 82 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-4 | 86 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDLNNVESPF LFDDLGDELL PLPSLSCIDN CFVPQFPSIL ENNNNSTVSP TLKNSRRKKP 60 VPANTSDDKD DENNSNEHKK KKIMHRDVER QRRQEMSSLY STLRSLLPIE YLKGKRSICD 120 HMHETVKYIR YMQSKIQELC DKRDELKKLQ SNNQNPGMVE TETLQSTKRD KVVVRARDGS 180 GGIQVILDTP TQHRLTLSNI LEALIDQGFE ILSCSSNKLN DRFLHTIESQ PAVFTDTNSP 240 LIDISDLQYM LANLEYCPLD * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147594.1 | 0.0 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A0A0KKN9 | 0.0 | A0A0A0KKN9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004164317.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 4e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.302580.1 |
Entrez Gene | 101216674 |
Publications ? help Back to Top | |||
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