 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.302180.1 |
| Common Name | Csa_5G160120, LOC105435442 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
MYB |
| Protein Properties |
Length: 227aa MW: 25561.8 Da PI: 8.613 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.302180.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed++l++ + G +W+++++ g++R++k+c++rw +yl
Cucsa.302180.1 14 KGPWTADEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.8 | 8.8e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
T E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
Cucsa.302180.1 70 LTDTEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
5999***************.*********.************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKKGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60
LRPDLKRGLL TDTEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG 120
IDPVTHEPIQ KQPENEKNQS SNTKTENNTV LDSSSSPPTM ENSSSVTTDE SSFLLDNNLS 180
SSNNNHESSF ITNTSFWIDE EALWNNNPPI SNGANFFVGR ELLLAS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Publications
? help Back to Top |
- Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
ODORANT1 regulates fragrance biosynthesis in petunia flowers.
Plant Cell, 2005. 17(5): p. 1612-24
[PMID:15805488] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402]
|
