PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.300810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 72aa    MW: 7652.94 Da    PI: 7.8326
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.300810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26030.69.3e-102051132
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfan 32
                    +C  Ck+l ++C+++C+lapyfp ++p kf  
  Cucsa.300810.1 20 PCLECKILHQRCVEKCILAPYFPPSEPLKFTL 51
                    699***********************999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.8551971IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-82051IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
SPSSSPSPSP IVQASVVVSP CLECKILHQR CVEKCILAPY FPPSEPLKFT LLTASSALAT  60
SSNCLWYFLN P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022949099.16e-15LOB domain-containing protein 1-like
SwissprotQ9LQR03e-12LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK084e-12LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2Z7BKX08e-14A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRINGXP_008463550.19e-14(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-11LOB domain-containing protein 11