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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.300780.1 |
| Common Name | Csa_3G510960, LOC101205848 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 274aa MW: 30303.4 Da PI: 8.624 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.300780.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.2 | 2.8e-18 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Lee F++n++++ ++++ LA++l+L rqV vWFqNrRa+ k
Cucsa.300780.1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTK 176
778899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 121.2 | 5.3e-39 | 122 | 210 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlsk+q++lLEesF+++++L+p++K+ lar+L+l prqv+vWFqnrRARtk kq+E+d+e Lk+++++l++en+rL+kev+eL+ +
Cucsa.300780.1 122 RKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELK-A 210
69*************************************************************************************9.4 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MGFDDFSKTG LVLGLGLSEL ADDQRTTLKK KPAPCSSSSL DFEPCVLTLG FSGGGGDTHR 60
KVIDHVGPHH LYRQASPHSS AVCSSFSGKV KRERDLSSEE VELERACWRV SDEDDDVCNN 120
TRKKLRLSKQ QSALLEESFK QNSTLNPKQK QGLARQLNLL PRQVEVWFQN RRARTKVKQT 180
EVDCELLKKC CETLTDENRR LQKEVQELKA IKLAKPVYMQ MSGATLTICP SCERVGTGGH 240
GGVADGNSNP KPKFSMPPNP FFYNPFSNPS AAC*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 120 | 126 | TRKKLRL |
| 2 | 170 | 178 | RRARTKVKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
Elife, 2017.
[PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239]
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