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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.300100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26336.2 Da PI: 4.7212 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 38 | 86 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+tae+Aa a+++a+++l+g Cucsa.300100.1 38 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAAIAYDRAARSLRG 86 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.297 | 37 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-29 | 37 | 93 | No hit | No description |
SMART | SM00380 | 7.8E-34 | 37 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 38 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 38 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 38 | 49 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-10 | 40 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
QTKHIKTFFF SYTNESIALQ TQKKAPPPPP AESTPHRFLG VRRRPWGRYA AEIRDPSTKE 60 RHWLGTFDTA EDAAIAYDRA ARSLRGSLAR TNFLYSDSPP PPPPLYSASI HHPNQPPLFL 120 PLLPPTPPSL LHQFPPAGDS LSGIISGDYD ASAELPPFPP AISSESVDCD YNNYGVMESQ 180 NVGFECFDQS SIGIGSCLGF DSSSDYIYNP MLGSMPTVSD VGAGDFESPA GNFYLPQSSD 240 Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 38 | 93 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-19 | 38 | 93 | 6 | 62 | ATERF1 |
3gcc_A | 5e-19 | 38 | 93 | 6 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151396.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1S3AU89 | 1e-108 | A0A1S3AU89_CUCME; ethylene-responsive transcription factor LEP | ||||
STRING | XP_004151396.1 | 1e-155 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.300100.1 |