PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.299450.1
Common NameCsa_4G646130, LOC101215280
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 346aa    MW: 38320.2 Da    PI: 9.1098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.299450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  Cucsa.299450.1 75 FICEICKKGFQRDQNLQLHRRGH 97
                    89*******************88 PP
2zf-C2H213.10.00029151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  Cucsa.299450.1 151 WKCEKCSKRYAVQSDWKAHSKIC 173
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.3E-67497No hitNo description
Gene3DG3DSA:3.30.160.605.0E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.5337597IPR007087Zinc finger, C2H2
SMARTSM003550.057597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.3E-6146171No hitNo description
SMARTSM00355130151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MTRTEISTTT PMYSHQSSSS INQPTPPLPP LPPPPPSKKK RNLPGNPEES LNFESDPEAE  60
VIALSPKSLL ATNRFICEIC KKGFQRDQNL QLHRRGHNLP WKLKQRGNKE VRKKVYVCPE  120
LTCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS KICGTREYRC  180
DCGTLFSRPF FSLPPPPPPP PPSHQNPNNP TSSIGFGLPG LGPGHLFASS CPAWEVNNNN  240
NNSCSAEIAP FFHHMVGFEE AASFEEALNG ILMSNSNRGN KNGGKGGGAA GEITRDFLGG  300
LRPVDSSMFQ NHDHQMINND MSNLDSPSTF GVHGQNQNTT CWRQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-22147189345Zinc finger protein JACKDAW
5b3h_F9e-22147189345Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101113KLKQRGNKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141426.20.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_011654179.10.0PREDICTED: zinc finger protein MAGPIE-like
TrEMBLA0A0A0L2R70.0A0A0A0L2R7_CUCSA; Uncharacterized protein
STRINGXP_004141426.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-92C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]