PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 619aa MW: 71109.5 Da PI: 6.5092

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.291770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	124	186	1	68
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 +W+++e laL+++r+++e+ + ++ We+vs+k+ e gf+r++ +Ckek+e+ ++++ i+ ++ Cucsa.291770.1 124 QWSNDELLALLRIRSNIENCFPES-----TWEHVSRKLGEVGFRRTADKCKEKFEEESRYFNHINYNK 186 7****************99998.....9*****************************9988655 PP
2	trihelix	95.4	5.4e-30	487	582	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+++evlaL+++r +m ++ +++ lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+q Cucsa.291770.1 487 RWPRDEVLALVNVRCKMYNNTTTTNnqdesqsggasLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQ 580 8************888888876445566666677*****************************************8.9999****** PP trihelix 85 le 86 l Cucsa.291770.1 581 LS 582 95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	22	121	178	IPR001005	SANT/Myb domain
Pfam	PF13837	7.8E-9	123	184	No hit	No description
PROSITE profile	PS50090	6.481	125	176	IPR017877	Myb-like domain
SMART	SM00717	0.52	331	557	IPR001005	SANT/Myb domain
Pfam	PF13837	4.6E-18	486	582	No hit	No description
CDD	cd12203	2.41E-22	486	562	No hit	No description
PROSITE profile	PS50090	6.179	487	555	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0001158	Molecular Function	enhancer sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MFEGGSVSEQ LHQFLTPRTT PPPPNSNSLP LIPLNFALHS PNFNFHPFDS YNATSTAHHH 60 HQIHLPHHLL HHQSPNPHGD DKNDVKTTTT AAGSSLQVGV DLEVGRENSR SILMEDHHII 120 HHDQWSNDEL LALLRIRSNI ENCFPESTWE HVSRKLGEVG FRRTADKCKE KFEEESRYFN 180 HINYNKNCRF LTHELNYNHH PNQDQDQDHL LLIHEGNGKP DDGGPTLVVV PEEGEEENQD 240 KDGELHDDDE EEDLRNDEMR PGRNEEERNE SSRSSSCQKS KKKRKMMRQK EFELLKGYCE 300 EIVKKMMIQQ EEIHSKLLQD MLKKEEEKVA KEEYWKKEQM ERLHKELEVM AHEQAIAGDR 360 QATIIEILNQ ITNSTTLISS SHESKKDLQN LLQSLNNYNN NNNIPNSTPS SSSLIQCQTS 420 SSPNKKPPHE NSNSFTSQND PIKNPKNNPC LSTQILAPQD PNSFINNHPN PKSKEKLDHE 480 SEDLGKRWPR DEVLALVNVR CKMYNNTTTT NNQDESQSGG ASLKAPLWER ISQGMLQLGY 540 KRSAKRCKEK WENINKYFRK TKDVNKKRSL DSRTCPYFHQ LSTLYNQGGG NNNPLENCPN 600 VSSENHSDHS ENHLATSS*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MFEGGSVSEQ LHQFLTPRTT PPPPNSNSLP LIPLNFALHS PNFNFHPFDS YNATSTAHHH  60
HQIHLPHHLL HHQSPNPHGD DKNDVKTTTT AAGSSLQVGV DLEVGRENSR SILMEDHHII  120
HHDQWSNDEL LALLRIRSNI ENCFPESTWE HVSRKLGEVG FRRTADKCKE KFEEESRYFN  180
HINYNKNCRF LTHELNYNHH PNQDQDQDHL LLIHEGNGKP DDGGPTLVVV PEEGEEENQD  240
KDGELHDDDE EEDLRNDEMR PGRNEEERNE SSRSSSCQKS KKKRKMMRQK EFELLKGYCE  300
EIVKKMMIQQ EEIHSKLLQD MLKKEEEKVA KEEYWKKEQM ERLHKELEVM AHEQAIAGDR  360
QATIIEILNQ ITNSTTLISS SHESKKDLQN LLQSLNNYNN NNNIPNSTPS SSSLIQCQTS  420
SSPNKKPPHE NSNSFTSQND PIKNPKNNPC LSTQILAPQD PNSFINNHPN PKSKEKLDHE  480
SEDLGKRWPR DEVLALVNVR CKMYNNTTTT NNQDESQSGG ASLKAPLWER ISQGMLQLGY  540
KRSAKRCKEK WENINKYFRK TKDVNKKRSL DSRTCPYFHQ LSTLYNQGGG NNNPLENCPN  600
VSSENHSDHS ENHLATSS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00011	PBM	Transfer from AT5G28300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	0.0	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142523.1	0.0	PREDICTED: trihelix transcription factor GTL2
TrEMBL	A0A0A0M3J3	0.0	A0A0A0M3J3_CUCSA; Uncharacterized protein
STRING	XP_004142523.1	0.0	(Cucumis sativus)
STRING	XP_004155698.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5043	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	4e-61	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.291770.1
Entrez Gene	101211010

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]