PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GeBP

Protein Properties

Length: 403aa MW: 45144.1 Da PI: 4.8783

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.288940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.2	4.4e-37	107	205	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 klfqrlw++eDei lLqG++d+++++g+ + ++ d+ fy+++k++++++++k+qlveK+rrLKkK+++ k++sgk+++f+++hdq +fe+s+ Cucsa.288940.1 107 KLFQRLWTDEDEIELLQGFLDYTMQRGTtHHHQnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISR 201 579***********************633446********************************************************* PP DUF573 94 kiWg 97 kiW Cucsa.288940.1 202 KIWS 205 *6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.7E-35	109	205	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDPRNDAVFP DEDLEDDEES LDDDDDDEEE EELNDEPSPS TSSAGPLPVT SVSATVTIAT 60 PPAVSVVPPP SIVSISSADL IRQRLETATA EPLTLPGEKK PLDESRKLFQ RLWTDEDEIE 120 LLQGFLDYTM QRGTTHHHQN DTALFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVIGKI 180 SSGKDFNFKS PHDQATFEIS RKIWSNTGRI GVDDNALDDD EPAPTPYATY MDHRNEEMMA 240 NCAEKKPTPT PKSRKRSRPG SGIRMEAPRS SHENLNKEKN SIYHHHHNHN NNNNANNNEN 300 VNNVAVSGLI EETVKSCLSP LFKELLNTSM GGGLCGGRAF SGLALHPIPL SFSGASLNFS 360 GGLEMGDERW RKQQILELEV YSKRLELVQE QIKTALEDLR KV*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDPRNDAVFP DEDLEDDEES LDDDDDDEEE EELNDEPSPS TSSAGPLPVT SVSATVTIAT  60
PPAVSVVPPP SIVSISSADL IRQRLETATA EPLTLPGEKK PLDESRKLFQ RLWTDEDEIE  120
LLQGFLDYTM QRGTTHHHQN DTALFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVIGKI  180
SSGKDFNFKS PHDQATFEIS RKIWSNTGRI GVDDNALDDD EPAPTPYATY MDHRNEEMMA  240
NCAEKKPTPT PKSRKRSRPG SGIRMEAPRS SHENLNKEKN SIYHHHHNHN NNNNANNNEN  300
VNNVAVSGLI EETVKSCLSP LFKELLNTSM GGGLCGGRAF SGLALHPIPL SFSGASLNFS  360
GGLEMGDERW RKQQILELEV YSKRLELVQE QIKTALEDLR KV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135666.2	0.0	PREDICTED: mediator-associated protein 1
TrEMBL	A0A0A0M1Q3	0.0	A0A0A0M1Q3_CUCSA; Uncharacterized protein
STRING	XP_004166334.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	7e-79	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cucsa.288940.1
Entrez Gene	101219457

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]