PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.288680.1
Common NameCsa_1G575100, LOC101216381
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 480aa    MW: 53479.3 Da    PI: 7.0153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.288680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.94e-36481901128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 
                     lp+G++F+Ptd+el+ e+L++kv++k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        
  Cucsa.288680.1  48 LPAGVKFDPTDQELI-EHLEAKVKSKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 140
                     799************.99*********5553344444434666646**********.555666799******************73334555544 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Cucsa.288680.1 141 ETRWHKTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 190
                     778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3844209IPR003441NAC domain
PROSITE profilePS5100533.1948209IPR003441NAC domain
PfamPF023652.2E-1649190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSGGSGGGSG GGSDSLLDAK LEQHQMCGSK HCPGCGHKLE GRPDWVGLPA GVKFDPTDQE  60
LIEHLEAKVK SKDMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDLQGG ETRWHKTGKT RPVMANGKQK GCKKILVLYT NFGKNRKPEK  180
TNWVMHQYHL GQHEEEKEGE LVVSKIFYQT QPRQCNWSER SMAAAEGSFD VSNLSRRETS  240
AVTTGSCSSM TQADDVSPAA TTGVGCSISS FSSLDIQHLK SDHFGFVPFR TTFDEVGMEE  300
GSTERKIGSK DGRGGSGEFE LRDHRHQRAA TLDHHHHHHH HQLVVAHDDH HHHSVVNHHL  360
PTTTFHVTNP THQISSIVIS PPPLLLLDHD SYHHHHSPII LQNQPFHQEQ EQQEEGESEH  420
HKMGGRSASG LEELIMGCTS SSIKHQPESS MPSGRETDQW MKYSSFWPDP NNPNLHGHG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112SGGSGGGSGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135810.20.0PREDICTED: uncharacterized protein LOC101216381 isoform X2
SwissprotQ9M0F81e-167NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0A0LYR70.0A0A0A0LYR7_CUCSA; Uncharacterized protein
STRINGXP_004158457.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-138NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]