 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.288590.1 |
Common Name | Csa_1G575180, LOC101216625 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
Family |
MYB |
Protein Properties |
Length: 241aa MW: 27097.1 Da PI: 6.9029 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.288590.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.5 | 2.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W+++Ed l ++++G+g +W + +++ g++R++k+c++rw++yl
Cucsa.288590.1 14 RGPWSPQEDATLTAFIHKHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
2 | Myb_DNA-binding | 41.1 | 4.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eEd + + G++ W+ Ia+ ++ gRt++++k++w++
Cucsa.288590.1 69 GGFTQEEDNVICSLYSTIGSR-WAVIASQLP-GRTDNDVKNHWNT 111
569******************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKRGPWSPQ EDATLTAFIH KHGTGGNWIA LPHKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG FTQEEDNVIC SLYSTIGSRW AVIASQLPGR TDNDVKNHWN TKLKKKFNSS 120 FSKPPNPIVV VTDPPRYSST STANSLKLHD DHEHNINTNF NMFSSHPPFD QIPMLNNNNN 180 PIIPELSTSS SSISLPIEQN HLEFSGPRSD EAADILQSYF HGVYENNNQY PYEDDVMDGF 240 D
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC234257 | 0.0 | AC234257.1 Cucumis sativus chromosome 1 BAC clone ccbaa, complete sequence. |