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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.286190.1 | ||||||||
Common Name | Csa_5G600930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 191aa MW: 21792.1 Da PI: 7.9942 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 186 | 2e-57 | 3 | 162 | 2 | 167 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ +e++CyvqC+ C+til+vsvP +sl++ vtv CGhC+sllsvn++ka+ + s l++ ++ +e+ e ++ k ++ ++s+ Cucsa.286190.1 3 HLFDLPEKICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATlvplH---FLSSLSH----NVPKETYREMNSGKFFDSFKRSN 90 7899********************************************9988732223...3333333....44444444434444444444433 PP YABBY 93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + s ++ ed+ +p + p v++PPe+rqr+Psayn+fik+ei+r+k++nP+++h+eaf +aaknWa fP+i Cucsa.286190.1 91 LKF-SEYE--V-EDDLIPVTTPfVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQ 162 333.3323..2.33344444444**************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-57 | 8 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.11E-10 | 104 | 160 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-6 | 112 | 163 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.91E-5 | 119 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MNHLFDLPEK ICYVQCGICT TILLVSVPCS SLSMAVTVTC GHCSSLLSVN MMKATLVPLH 60 FLSSLSHNVP KETYREMNSG KFFDSFKRSN LKFSEYEVED DLIPVTTPFV NKPPERRQRA 120 PSAYNCFIKD EIRRLKTQNP EMTHKEAFRT AAKNWANFPP IQEKDDKEKC NQIEENGSWN 180 TQIPEVKIKL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 1e-59 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 1e-59 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135480.2 | 1e-138 | PREDICTED: axial regulator YABBY 4-like | ||||
Swissprot | Q9LDT3 | 1e-57 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0A0KTN4 | 1e-138 | A0A0A0KTN4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155406.1 | 1e-138 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-60 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.286190.1 |