PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28879.2 Da PI: 4.9232

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.285390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	40	92	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q++ Le+ F+ ++++ +e++ ++A+++gL rqV vWFqNrRa+ k Cucsa.285390.1 40 KRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK 92 568999*********************************************98 PP
2	HD-ZIP_I/II	117.9	5.8e-38	39	130	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls +qv+lLE++F+ e+kLe+erKv++a+e+gl+prqvavWFqnrRAR k+k++E+dye L ++yd+lk++ ++L + ++eL++e+++ Cucsa.285390.1 39 KKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNMNHELKAEVDQ 130 9**************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.4E-15	37	98	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.115	39	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-17	39	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-16	39	104	IPR009057	Homeodomain-like
CDD	cd00086	1.64E-14	39	92	No hit	No description
Pfam	PF00046	2.4E-15	40	92	IPR001356	Homeobox domain
PRINTS	PR00031	3.2E-5	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.2E-5	74	90	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-12	94	132	IPR003106	Leucine zipper, homeobox-associated
Gene3D	G3DSA:1.20.142.10	8.7E-4	100	216	IPR004102	Poly(ADP-ribose) polymerase, regulatory domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006471	Biological Process	protein ADP-ribosylation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDSETTHFLS KPEASSLPCF WVSDSCSSMK GEGTTLGGKK RRLSVDQVRL LEKNFNDENK 60 LEHERKVQIA EEIGLRPRQV AVWFQNRRAR SKMKRIESDY ECLSAEYDKL KSDFDSLLNM 120 NHELKAEVDQ LRTTWAAVEK MKNHFEPVGV EAMDSSVTKL EKANAKTMGE ILYKVQMGSS 180 RHEEGSLSSS KSDGFYSESP TRDNQSKSAN FLQDEEDELG CLGKLEDELS ANELMNSFNI 240 LSSAVENQSF CFWS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135200.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBL	A0A0A0KVU6	0.0	A0A0A0KVU6_CUCSA; Homeobox protein
STRING	XP_004155327.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24616	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	7e-34	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Cucsa.285390.1
Entrez Gene	101204430

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]