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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.283860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 253aa MW: 28130.6 Da PI: 6.7846 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.4 | 5.5e-12 | 208 | 233 | 1 | 26 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 k+r++W++eLH+rFv+a++qLGG++ Cucsa.283860.2 208 KQRRCWSSELHRRFVHALQQLGGPHG 233 79*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 205 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-8 | 208 | 233 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDFVHTFLDI RVGMDLSNYA DALDRERQKI QVFQRELPLC LELVTRAIDS CRQQLSGVST 60 ESSEHTSSDR PVLEEFIPIN KPCVNSHFEI EEDEQSKPGK IELGRSDWLK SAQLWNQSPD 120 PPLTEDVAKE VVEVKNNGGG GAFQPFEKTT PLKTESAVVV GRTAGSSFPE ATTISIPETT 180 TSSTAGTASK CGGGTAKRED KESQTQRKQR RCWSSELHRR FVHALQQLGG PHGTKKSKIF 240 LQFLSYFLNK LF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 1e-106 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 1e-106 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135112.1 | 1e-172 | PREDICTED: uncharacterized protein LOC101203539 | ||||
TrEMBL | A0A0A0KWD5 | 1e-171 | A0A0A0KWD5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004135112.1 | 1e-172 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 7e-44 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.283860.2 |