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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.283620.2 | ||||||||
Common Name | Csa_5G609620, LOC101221197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34678.9 Da PI: 4.4633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 110 | 158 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+y+GVr+++ +g+W+AeIrd + + r r++lg+++taeeA +a++ r+++ Cucsa.283620.2 110 SKYRGVRQRS-WGKWAAEIRDpF-K---RSRVWLGTYDTAEEASQAYESRRLQF 158 89*****999.**********55.3...5******************8766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.8E-12 | 110 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 110 | 158 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-22 | 111 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.77 | 111 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-18 | 111 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.34E-23 | 111 | 151 | No hit | No description |
PRINTS | PR00367 | 9.2E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MSCSPNQRSV SSSRKSNLLP NKFSADPRMR RKLRIICYDP DATDSSSSED EGETYARKFN 60 RIVHEIHLPP LKKSLESESS QNSNNENKNL KFKQSKALFK NPSSRRPSSS KYRGVRQRSW 120 GKWAAEIRDP FKRSRVWLGT YDTAEEASQA YESRRLQFET MAAEMAVEEE GKGSGSSSTP 180 VFSESTAETT VSHTSPSSVL EWADSTVQSH DLKEGTESIK EETDSNMNYL QEGDPSNPFM 240 EEISMGIDFD SILADGIGMF LEDFASFDNT QILGLADDEP SGLPSWDFED FGNDDISCWL 300 DDSINITCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 110 | 163 | 13 | 67 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 33 | RMRRKLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135102.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_011655773.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A0A0KWF1 | 0.0 | A0A0A0KWF1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159298.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.283620.2 |
Entrez Gene | 101221197 |
Publications ? help Back to Top | |||
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