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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.283560.1 |
Common Name | Csa_5G609680 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 182aa MW: 19782.7 Da PI: 8.3568 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.283560.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 90.6 | 1.9e-28 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C++C++lr++C++dC+++p++ ++q++++ +++k++G++ + +l++a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+
Cucsa.283560.1 4 SCNGCRILRKGCSDDCIIRPCLqwipsSDSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQA 98
6*********************99954446789************************************************************** PP
DUF260 91 kaelall 97
+++++l
Cucsa.283560.1 99 AVDAVLN 105
9998765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MRMSCNGCRI LRKGCSDDCI IRPCLQWIPS SDSQANATIF LAKFYGRAGL FNLITAAAQH 60 LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWERCQAAV DAVLNGSMNV EPDTPPSNNG 120 NLSLKCCDIR HVCNEPNLAA SGDLLKVKGR SRFKKPDHRT KPKPGPDHDL GIGSSFDEAG 180 RD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681896 | 1e-172 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. |
GenBank | LN713264 | 1e-172 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |