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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.282100.5 | ||||||||
Common Name | Csa_1G425940, LOC101203659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18529.7 Da PI: 4.8141 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.3e-14 | 49 | 92 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + Er+RR+++N++++ Lr+++P+ + K++Ka+i + A++YI++L Cucsa.282100.5 49 VASERNRRRKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIHDL 92 578*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-18 | 41 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.831 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.18E-14 | 46 | 97 | No hit | No description |
Pfam | PF00010 | 1.1E-11 | 48 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-16 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-17 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDIIGDDYLN PFGNEIFIGE ELDSWGLEEP FSGDYDSSSP DGSAASKNVA SERNRRRKLN 60 ERLFALRSVV PNISKMDKAS IIKDAIDYIH DLHDQERRIQ AEIYELESGK LKKITGYEFD 120 QDQLPLLLRS KRKKTEQYFS YDSPVSRISP IEVLDCNIHG R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-14 | 48 | 102 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-104 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-104 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146337.1 | 1e-110 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 9e-38 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0A0LU95 | 1e-108 | A0A0A0LU95_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146337.1 | 1e-109 | (Cucumis sativus) | ||||
STRING | XP_004161793.1 | 1e-109 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29930.4 | 2e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.282100.5 |
Entrez Gene | 101203659 |
Publications ? help Back to Top | |||
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