PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.278220.1
Common NameCsa_5G341040, LOC101212264
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 469aa    MW: 52201.9 Da    PI: 6.6091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.278220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1658102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rW +eE+e++++a k++G + W+ I +++g ++t+ q++s+ qk+
   Cucsa.278220.1  58 RERWKEEEHEKFIEALKLYGRD-WRQIEEHVG-TKTAVQIRSHAQKF 102
                      78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1552107IPR009057Homeodomain-like
PROSITE profilePS5129421.51953107IPR017930Myb domain
TIGRFAMsTIGR015575.1E-1656105IPR006447Myb domain, plants
SMARTSM007172.1E-1357105IPR001005SANT/Myb domain
PfamPF002492.5E-1358101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-95898IPR009057Homeodomain-like
CDDcd001672.46E-1060103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGAVNMELQN TGGGLCSDNI SSAVYEPTVT PDQYSSANVQ LKEFCPKVRK PYTITKQRER  60
WKEEEHEKFI EALKLYGRDW RQIEEHVGTK TAVQIRSHAQ KFFSKVTRNS NGCSTTSIGC  120
IEIPPPRPKR KPAHPYPRKE VPQSHKASPI SEQTRSLSPQ LSEKECQSPT SIVVAGSGSD  180
TLMFTDSRIH HDSGSPDSSI PSTEPNSSSL DNESPTAALG IENSIPHEKI PTNLELFTKD  240
NVIEKDDSTK EVSIQSLKLF GRTVLITDPH KHTPILENSM PEADRKPGEN QKQVSPWNSI  300
VMDSSTGNTD CTWNHGAFYF IQLNNGDSKQ GDSAVPVSWW SSYGSYPFSF VHCFKQADSN  360
PNQVNDKETH KDQSWCGSNT GSVNSGENGD KVSENDVESC RLFHNNRDGD SVSKEELIGK  420
ALSCELISSH EKNTKGFVPY KRCMAERATK PHTITEAERE EKRIRLCL*
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818940.0LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655141.10.0PREDICTED: protein REVEILLE 1-like isoform X1
SwissprotF4KGY66e-53RVE1_ARATH; Protein REVEILLE 1
TrEMBLA0A0A0KPX50.0A0A0A0KPX5_CUCSA; Uncharacterized protein
STRINGXP_008463161.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-49MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  6. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]