PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.277740.1
Common NameCsa_2G092800, LOC101219473
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 651aa    MW: 70014.5 Da    PI: 6.7203
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.277740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.8e-15262321155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Cucsa.277740.1 262 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 321
                     57*******************666664478446*************************98 PP
2AP250.93.8e-16364415155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Cucsa.277740.1 364 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 415
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-17262331IPR016177DNA-binding domain
PfamPF008471.2E-11262321IPR001471AP2/ERF domain
CDDcd000186.64E-22262331No hitNo description
PROSITE profilePS5103219.164263329IPR001471AP2/ERF domain
SMARTSM003801.4E-29263335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15263330IPR001471AP2/ERF domain
PRINTSPR003673.3E-6264275IPR001471AP2/ERF domain
PfamPF008474.7E-11364415IPR001471AP2/ERF domain
CDDcd000183.89E-24364425No hitNo description
SuperFamilySSF541711.24E-17364425IPR016177DNA-binding domain
PROSITE profilePS5103218.834365423IPR001471AP2/ERF domain
SMARTSM003806.0E-33365429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17365424IPR001471AP2/ERF domain
PRINTSPR003673.3E-6405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MGSINWLGFS LSPQHQPSDH AHAAAATAPF TSDQISPSDV SAVCFDNLPS SYAVYEHSQD  60
WNNMKGLGST QSSDFSALIE SQHQPKLENF LGHHSFTDHD HDHATAAVYT NASANYIFQN  120
SSLDLPSEAA GCGGGRPSAG NGNANNTTSI GLSMIKTWLR NQPAPPQVVA KGGGDHDGSA  180
VGISNHLTTA HTLSLSMNTG PPPPSQSSSG SAALPLLTAS GGESSSSDNK QGKSSGASID  240
AENGAVEAAP RKSVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQVYLG  300
GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SDYEKELEDM KHMTRQEFVA SLRRKSSGFS  360
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE EAAEAYDIAA IKFRGLNAVT  420
NFDMSRYDVK AILESNTLPI GGAAKRLKDI HHSDIPLDPQ RAEDNITSHL SDGIINITST  480
TTPYSGGGWP TIAFHHHHPY AFHYPYATPQ QRMWCKQEQD ATAIAADNFF PHGGAMDSMD  540
HSSGSYSSAN GDGYNGNFLI PMGAEGSSSN NGGLGDIGEV NLFGGCSNVD DPFHATRTSN  600
LYNYHNSSHQ LQPPPPPSGL QGSNCNNWLP PARSVCQGGA PPPFTIWNDT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818460.0LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138981.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-143BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0A0LKQ90.0A0A0A0LKQ9_CUCSA; Uncharacterized protein
STRINGXP_004138981.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-129AP2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]