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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.275510.1 | ||||||||
Common Name | Csa_5G492330, LOC101219573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1384aa MW: 151911 Da PI: 7.979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 962 | 1002 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ Cucsa.275510.1 962 YWTDGEKSLFIEAVSVYGKN-FSVISTHVG-SKSTDQCKVFFS 1002 5*****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-14 | 736 | 796 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.336 | 748 | 799 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-5 | 749 | 797 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-4 | 752 | 793 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.41 | 958 | 1009 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-6 | 959 | 1007 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.02E-11 | 960 | 1009 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 962 | 1002 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.76E-5 | 963 | 1001 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-5 | 963 | 1003 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1384 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSEFLGPLPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSEEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY ARNGRESRSF SQRDWKGHSW 120 ATSNGSTNNG GRMQHDLNYD QRSVHDMLIY PSHSHSDFVN PREKVKGQHD KVDDVNGLGT 180 NQRRDREYSV SSSGWKPLKW TRSGGLSSRT STSGHSSSKK SIDALDSNDR KSETVSKNAS 240 QNFSPSADHA ECAMSSLPYD DASARKKPRL GWGEGLAKYE KKKVEVPDGS TAFTNITAES 300 THSLNSSLIE KGPRGSGFAD CTSPATPSSV ISGSPPGGDE KSFGKASSDN DVSNFHGSPG 360 SCFQNQYEGT STVEKLDNFS IANLCSPLIQ LLQSNDSISV DSTALSKLLI YKNQISKVLE 420 TTESEIDLLE NELKGLKSES KGYFSFTLAS SSLLVGDKFF EEQNNVANAV ATLPVVTSAN 480 TISKTMAHST SDLEEVYADK DRSGRLDVKE SVMKEKLTIY GCSVKENIAA YIDNSVPIKS 540 EGVTVHPVAN DMYECAEGGD SVSDLILASN KESACKASEA LIGMLPTNER KIDIWSTNAC 600 SQNQCLVKER FAKRKRLLRF KERVITLKFK AYQSLWKENL HVPPVRKLRA KSQKKHQLSL 660 WTNYSGYQKN RSSIRYRMPS PAGNLNPVSS TEILKHVSMQ LSTPQIKQYR RTLKMPALVL 720 DQKDKMGSRF ISNNGLVENP CAVEKERAMI NPWTSEEKDV FMEKLECFGK DFGKIASFLD 780 HKTTADCVEF YYKNHKSDCF EKTKKLEFGK KVKSSTSNYL MTTGKKWNPE TNAASLDMLG 840 AASTMTARAH KYSSSRSGGR TSYHITQFDD GLSERAKGLN GFGNEREKVA ADVLAGICGS 900 LSSEAMGSCV TSNFNRGDSS QDLKCKKGVT TVLRQRMTTN VPRYVDNEIF SDESCGEMGP 960 SYWTDGEKSL FIEAVSVYGK NFSVISTHVG SKSTDQCKVF FSKARKCLGL DLICSAKKMP 1020 DNGNGHDADR SNGEGGVDTK DAFPCEMVGS RVVDDLPKAV MSISGGESES MNLQSTHQEV 1080 NPSSKTCSNA AVDAMVSDDE CTRKDGSQSG FDDDCQSVNS ANDKNGLIHE QQHVVISDET 1140 AKEQDISVLV ATSVGNVSDT ETKRGNVDAS TARGDKADSH ATDCPSIPSN SHITSSAKEE 1200 QGRHHVRVHS RSLSDSEQSS RNGDIKLFGQ ILTHSSFVPS SKSGSSENGI KTTEPHHKFK 1260 RRLKVNSHGN LSTAKFNCKN SPGQEENTPS RSYGIWDGNQ IRTGLLSLPD PTTLLSRYPT 1320 FNHLSKPASS PTEQSPSGCK EETSNSNKET QKREVNNSRK EEVVGEMNVE ESCCNEGGGG 1380 GGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 710 | 801 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 710 | 801 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681892 | 0.0 | LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143829.1 | 0.0 | PREDICTED: uncharacterized protein LOC101219573 isoform X1 | ||||
TrEMBL | A0A0A0KU04 | 0.0 | A0A0A0KU04_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143829.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-126 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.275510.1 |
Entrez Gene | 101219573 |
Publications ? help Back to Top | |||
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