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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.272210.1 |
| Common Name | Csa_4G663700, LOC101204139 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WOX |
| Protein Properties |
Length: 270aa MW: 30643.2 Da PI: 5.6198 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.272210.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 65.7 | 6.3e-21 | 96 | 156 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+
Cucsa.272210.1 96 RQRWTPTPVQLQILEQIFDEgNGTPSKQKIKDITLQLtqhgQISEANVYNWFQNRRARSKR 156
89*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 101.5 | 6.2e-33 | 95 | 158 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
ar+RWtPtp Q++iLe+++++G tP+k++i++it +L+++G+i+++NV++WFQNr+aR+++kq
Cucsa.272210.1 95 ARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQ 158
789***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MEWQNQQQQN QTEQLQMQVE QLSNADGVGG LYVKVMTDEQ MELLRQQISV YASICEQLVE 60
MHKAITAQQD LAGMRLGNLY CDPIMASAAG HKITARQRWT PTPVQLQILE QIFDEGNGTP 120
SKQKIKDITL QLTQHGQISE ANVYNWFQNR RARSKRKQAN SLPNNADSEP ETEVDSPKEK 180
KTKPEAFQTY EHLVPKSGNM YSQRTDLSTE ILSFDAQSNK GEPMFQSFGS GHTSQMTPIQ 240
NHRNNMSNDK MNVPDYSPYT PCEGYHLVE*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 149 | 157 | RRARSKRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402]
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