PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.265990.1
Common NameCsa_2G120400, LOC101203959
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 386aa    MW: 42229.3 Da    PI: 6.8622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.265990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13165211354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h + Er+RR ++N+++  Lr+l+P +     +K++ a+i+  A++YI++L
  Cucsa.265990.1 165 TKHFATERQRRVQLNDKYKALRSLVPIP-----TKNDRASIVGDAINYIQEL 211
                     78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.33E-15163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-12163216No hitNo description
PfamPF000105.6E-11165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGFNHNHVQS QFSDSAIPPT PYTQPPDLLN FLNMPPTARC SNNSSISFSN LHTPAMGAFL  60
GDLPPGDAPN SSSTSLSILY DPLFHLNLPP QPPLFRELFH SLPHGYGMPA ASSRGRGGSL  120
FPEGSEIVER EGTAGVYEDG DGSGVLEFSR DMADCIGKRR DGKMTKHFAT ERQRRVQLND  180
KYKALRSLVP IPTKNDRASI VGDAINYIQE LLREVKELKL LVEKKRSSRE RSKRVRTAEE  240
IEQGGGSGGG GGGGGGGGAW DVESSNAKGG EGVVEDQRYN LRSSWLQRKT KDTEVDVRIV  300
DDEVTVKLVQ RKLNCLLLVS KLLEDLQLDL HHVAGGHIGD YYSFLFNTKI YEGSSVYASA  360
IANKVMEAVD RQYNNTSISP LTNTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649069.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0A0LI110.0A0A0A0LI11_CUCSA; Uncharacterized protein
STRINGXP_004139000.10.0(Cucumis sativus)
STRINGXP_004173553.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-52bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]